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dr. ir. J. (Jeroen) de Ridder

dr. ir. J. (Jeroen) de Ridder

Full Professor

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Research Output (50)

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex

Babaei Sepideh, Mahfouz Ahmed, Hulsman Marc, Lelieveldt Boudewijn P.F., de Ridder Jeroen, Reinders Marcel J T 1 May 2015, In: PLoS Computational Biology. 11

Genome wide DNA methylation profiles provide clues to the origin and pathogenesis of germ cell tumors

Rijlaarsdam Martin A., Tax David M.J., Gillis Ad J.M., Dorssers Lambert C.J., Koestler Devin C., De Ridder Jeroen, Looijenga Leendert H J 10 Apr 2015, In: PLoS ONE [E]. 10

3D hotspots of recurrent retroviral insertions reveal long-range interactions with cancer genes

Babaei Sepideh, Akhtar Waseem, De Jong Johann, Reinders Marcel J T, De Ridder Jeroen 27 Feb 2015, In: Nature Communications [E]. 6

Integration of gene expression and DNA-methylation profiles improves molecular subtype classification in acute myeloid leukemia

Taskesen Erdogan, Babaei Sepideh, Reinders Marcel J T, de Ridder Jeroen 23 Feb 2015, In: BMC Bioinformatics. 16

Scale-space measures for graph topology link protein network architecture to function

Hulsman Marc, Dimitrakopoulos Christos, De Ridder Jeroen 15 Jun 2014, In: Bioinformatics. 30

Identifying regulatory mechanisms underlying tumorigenesis using locus expression signature analysis

Lee Eunjee, De Ridder Jeroen, Kool Jaap, Wessels Lodewyk F A, Bussemaker Harmen J. 15 Apr 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111 , p. 5747-5752 6 p.

Insertional Mutagenesis and Deep Profiling Reveals Gene Hierarchies and a Myc/p53-Dependent Bottleneck in Lymphomagenesis

Huser Camille A., Gilroy Kathryn L., de Ridder Jeroen, Kilbey Anna, Borland Gillian, Mackay Nancy, Jenkins Alma, Bell Margaret, Herzyk Pawel, Van Der Weyden Louise, Adams David J., Rust Alistair G., Cameron Ewan R., Neil James C. Feb 2014, In: PLoS Genetics. 10

Soft Skills:An Important Asset Acquired from Organizing Regional Student Group Activities

de Ridder Jeroen, Meysman Pieter, Oluwagbemi Olugbenga, Abeel Thomas 2014, In: PLoS Computational Biology. 10

Chromatin Landscapes of Retroviral and Transposon Integration Profiles

De Jong Johann, Akhtar Waseem, Badhai Jitendra, Rust Alistair G., Rad Roland, Hilkens John, Berns Anton, van Lohuizen Maarten, Wessels Lodewyk F A, de Ridder Jeroen 2014, In: PLoS Genetics. 10

The Young PI Buzz:Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013

de Ridder Jeroen, Bromberg Yana, Michaut Magali, Satagopam Venkata P., Corpas Manuel, Macintyre Geoff, Alexandrov Theodore Nov 2013, In: PLoS Computational Biology. 9

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