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prof. dr. ir. A. van Oudenaarden

prof. dr. ir. A. van Oudenaarden

Full Professor
  • Molecular Cancer Research

Research Programs

Strategic Program Cancer

Side Activities

  • Director of the Hubrecht Institute
  • Professor of Quantitative Biology of Gene Regulations at the University Medical Center Utrecht and at Utrecht University
  • Member of the Koninklijke Hollandsche Maatschappij der Wetenschappen (KHMW)
  • Member of the Royal Netherlands Academy of Arts and Sciences (KNAW)
  • Member of the organizing committee of Single Cell Genomics (yearly conference)
  • Member of the advisory board of Single Cell Discoveries B.V.
  • Member of the national scientific advisory board of The Netherlands Cancer Institute (NKI)
  • Member of the advisory editorial board of Molecular Systems Biology
  • Member of the scientific advisory board at the Whitehead Institute for Biomedical Research
  • Member of the American Academy of Arts and Sciences as from 2022

Research Output (122)

scChIX-seq infers dynamic relationships between histone modifications in single cells

Yeung Jake, Florescu Maria, Zeller Peter, de Barbanson Buys Anton, Wellenstein Max D., van Oudenaarden Alexander 2023, In: Nature Biotechnology. 41 , p. 813-823 11 p.

Epiblast inducers capture mouse trophectoderm stem cells in vitro and pattern blastoids for implantation in utero

Seong Jinwoo, Frias-Aldeguer Javier, Holzmann Viktoria, Kagawa Harunobu, Sestini Giovanni, Heidari Khoei Heidar, Scholte Op Reimer Yvonne, Kip Maarten, Pradhan Saurabh J., Verwegen Lucas, Vivié Judith, Li Linfeng, Alemany Anna, Korving Jeroen, Darmis Frank, van Oudenaarden Alexander, ten Berge Derk, Geijsen Niels, Rivron Nicolas C. 7 Jul 2022, In: Cell stem cell. 29 , p. 1102-1118.e8

Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo

van Leeuwen Wessel, VanInsberghe Michael, Battich Nico, Salmén Fredrik, van Oudenaarden Alexander, Rabouille Catherine 20 Jun 2022, In: Cell reports methods. 2

BMP gradient along the intestinal villus axis controls zonated enterocyte and goblet cell states

Beumer Joep, Puschhof Jens, Yengej Fjodor Yousef, Zhao Lianzheng, Martinez-Silgado Adriana, Blotenburg Marloes, Begthel Harry, Boot Charelle, van Oudenaarden Alexander, Chen Ye Guang, Clevers Hans 1 Mar 2022, In: Cell Reports. 38

Differential Survival and Therapy Benefit of Patients with Breast Cancer Are Characterized by Distinct Epithelial and Immune Cell Microenvironments

Kester Lennart, Seinstra Danielle, van Rossum Annelot G.J., Vennin Claire, Hoogstraat Marlous, van der Velden Daphne, Opdam Mark, van Werkhoven Erik, Hahn Kerstin, Nederlof Iris, Lips Ester H., Mandjes Ingrid A.M., van Leeuwen-Stok A. Elise, Canisius Sander, van Tinteren Harm, Imholz Alex L.T., Portielje Johanneke E.A., Bos Monique E.M.M., Bakker Sandra D., Rutgers Emiel J., Horlings Hugo M., Wesseling Jelle, Voest Emile E., Wessels Lodewyk F.A., Kok Marleen, Oosterkamp Hendrika M., van Oudenaarden Alexander, Linn Sabine C., van Rheenen Jacco 1 Mar 2022, In: Clinical Cancer Research. 28 , p. 960-971 12 p.

High-throughput total RNA sequencing in single cells using VASA-seq

Salmen Fredrik, De Jonghe Joachim, Kaminski Tomasz S., Alemany Anna, Parada Guillermo E., Verity-Legg Joe, Yanagida Ayaka, Kohler Timo N., Battich Nicholas, van den Brekel Floris, Ellermann Anna L., Arias Alfonso Martinez, Nichols Jennifer, Hemberg Martin, Hollfelder Florian, van Oudenaarden Alexander 2022, In: Nature Biotechnology. 40 , p. 1780-1793 14 p.

Single-cell sortChIC identifies hierarchical chromatin dynamics during hematopoiesis

Zeller Peter, Yeung Jake, Viñas Gaza Helena, de Barbanson Buys Anton, Bhardwaj Vivek, Florescu Maria, van der Linden Reinier, van Oudenaarden Alexander 2022, In: Nature Genetics. 55 , p. 333-345 13 p.

Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics during early mammalian development

Sen Maya, Mooijman Dylan, Chialastri Alex, Boisset Jean Charles, Popovic Mina, Heindryckx Björn, Chuva de Sousa Lopes Susana M., Dey Siddharth S., van Oudenaarden Alexander Dec 2021, In: Nature Communications. 12

Single-cell transcriptomics links loss of human pancreatic β-cell identity to er stress

Groen Nathalie, Leenders Floris, Mahfouz Ahmed, Munoz-Garcia Amadeo, Muraro Mauro J., de Graaf Natascha, Rabelink Ton J., Hoeben Rob, van Oudenaarden Alexander, Zaldumbide Arnaud, Reinders Marcel J.T., de Koning Eelco J.P., Carlotti Françoise Dec 2021, In: Cells. 10

Molecular characterization of Barrett's esophagus at single-cell resolution

Busslinger Georg A, de Barbanson Buys, Oka Rurika, Weusten Bas L A, de Maat Michiel, van Hillegersberg Richard, Brosens Lodewijk A A, van Boxtel Ruben, van Oudenaarden Alexander, Clevers Hans 23 Nov 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118 , p. 1-12

All research output

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